rs2106928 chr12:47081062 C>G

Sequence
tggagactatgaggctgatgagct[C/G]tacgattaaaaatccatttttgtt
ASB in cell types
K562 (myelogenous leukemia) SEM (childhood B acute lymphoblastic leukemia)
ASB for transcription factors
MGAP_HUMAN ERG_HUMAN CEBPB_HUMAN RING2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MGAP_HUMAN 3.84 n/a 3.2·10-51.00 2.00 n/a No Hit
ERG_HUMAN 1.90 -1.63 0.021.00 1.00 n/a No Hit
CEBPB_HUMAN 2.54 n/a 0.031.00 2.25 n/a No Hit
RING2_HUMAN 2.79 -5.12 0.041.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP fasting blood glucose,  ldl cholesterol,  suicide attempts in bipolar disorder (substance abuse/dependence),  total cholesterol

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