rs2107621 chr19:43759614 G>A

Sequence
attagctatgcgcaaaaatgttca[G/A]tgaaaacagtgctggttgctgtga
ASB in cell types
BJ (fibroblasts)
ASB for transcription factors
P63_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
P63_HUMAN -0.49 2.02 1.002.7·10-3 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  parkinsons disease,  salmonella-induced pyroptosis,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Stomach,  Testis,  Thyroid,  Vagina,  Whole_Blood

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