rs2107963 chr7:149601063 C>T
- Sequence
tggctcgccacaacctccgcttcc[C/T]gggttcaagcaatgctcctacctc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Th1-cells
- ASB for transcription factors
- ELF1_HUMAN TBX21_HUMAN MTA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -1.77 | 1.77 | 1.00 | 2.70 | Concordant | |||
| TBX21_HUMAN | -0.31 | 1.36 | 1.11 | n/a | No Hit | |||
| MTA2_HUMAN | -1.09 | 1.09 | 1.00 | n/a | n/a |
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Motif analysis
