rs2108167 chr7:41678509 T>G

Sequence
ctaaagaaaaaacagaggtggaaa[T/G]atatcactaagccctaaacatacc
ASB in cell types
VCaP (prostate carcinoma) LNCaP (prostate carcinoma) LNCaP95
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.88 1.87 1.001.5·10-9 1.61 n/a No Hit
ANDR_HUMAN -0.02 1.97 1.008.2·10-9 1.53 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP college completion,  fasting insulin,  homa-ir,  ldl cholesterol change with statins,  parkinsons disease,  total cholesterol change with statins

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