rs2110165 chr12:21437854 C>A
- Sequence
ggcggttccgcctctttccccgac[C/A]ccaaaggggatagcactggaggcc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) spleen
- ASB for transcription factors
- TYY1_HUMAN RBBP5_HUMAN FOXK2_HUMAN BACH1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.42 | 1.13 | 1.64 | n/a | No Hit | |||
| RBBP5_HUMAN | 2.20 | -4.66 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.55 | -2.48 | 1.50 | n/a | No Hit | |||
| BACH1_HUMAN | 2.42 | -2.26 | 1.00 | n/a | No Hit |
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP eye color, hdl cholesterol, maternal transmission distortion, obesity with early age of onset (age >2), stabilized warfarin dose, tetrology of fallot, transmission distortion, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina