rs2110585 chr5:134176930 C>A
- Sequence
gcgttagcgaaggaagagaaaaac[C/A]gaagacgaagccactacagcgtcg
- ASB in cell types
- HepG2 (hepatoblastoma) CD14+ monocytes 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TYY1_HUMAN STAT1_HUMAN ANDR_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 3.31 | -5.38 | 1.50 | n/a | No Hit | |||
| STAT1_HUMAN | 2.37 | -4.01 | 2.00 | 1.08 | Weak Discordant | |||
| ANDR_HUMAN | 2.96 | n/a | 3.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.50 | n/a | 1.50 | 4.35 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood