rs2113084 chr5:56737844 T>C

Sequence
tacatatatattaaatttgtggca[T/C]gcaaatattaaaactatttggggt
ASB in cell types
TTC-1240 (Rhabdoid tumor of the kidney)
ASB for transcription factors
SSXT_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SSXT_HUMAN 2.35 -1.88 0.031.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  infant head circumference,  parkinsons disease,  waist hip ratio
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Esophagus_Mucosa,  Muscle_Skeletal,  Thyroid,  Whole_Blood

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