rs2114430 chr2:64283948 C>T

Sequence
ctcctaccccagtgtgaattaggc[C/T]gagttaggctctcccccagtcttt
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia)
ASB for transcription factors
IKZF1_HUMAN IKZF2_HUMAN MEIS2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -2.49 2.00 1.002.1·10-5 1.50 n/a n/a
IKZF2_HUMAN -0.52 1.61 1.000.02 1.00 n/a n/a
MEIS2_HUMAN n/a 1.17 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  height,  refractive error
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Amygdala,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Colon_Sigmoid,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Nerve_Tibial,  Testis,  Thyroid,  Whole_Blood

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