rs2116023 chr7:151027716 G>A
- Sequence
ttaccttgtttacgatgcagagac[G/A]tttgttcacgtgtttaccttctga
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor xenograft LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ARI1B_HUMAN SMCA4_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.78 | -0.58 | 1.67 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.28 | -3.50 | 1.50 | n/a | n/a | |||
| SMCA4_HUMAN | 1.56 | -2.97 | 1.50 | n/a | n/a | |||
| HDAC1_HUMAN | 1.55 | -0.18 | 1.50 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood