rs2116898 chr19:11131134 G>A
- Sequence
aagtgactgaatccggtactcacc[G/A]tctccctctggcggctcctggggg
- ASB in cell types
- neutrophils from periferal blood HEK293 (embryonic kidney) K562 (myelogenous leukemia) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- GLIS1_HUMAN SMCA5_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | 2.24 | n/a | 2.00 | n/a | No Hit | |||
| SMCA5_HUMAN | 2.20 | -1.88 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Stomach, Testis, Thyroid, Whole_Blood