rs2118889 chr2:42224543 C>A
- Sequence
gcaagtttttatgtggtcatctgt[C/A]tttatttctcttaggtgtatactt
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.48 | -1.70 | 2.00 | 1.17 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP height, ldl cholesterol, lp-pla2 mass, simpson-angus scale, total cholesterol, triglycerides change with statins
GTEx eQTL Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg