rs2122031 chr3:11272457 G>A
- Sequence
aagtgagccgcggcgggcgagggt[G/A]tagtggggtcttgctgggccggtt
- ASB in cell types
- HEK293 (embryonic kidney) neutrophils from periferal blood GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- RAD21_HUMAN SCRT2_HUMAN CTCF_HUMAN ZBT21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 3.09 | -0.32 | 1.25 | n/a | n/a | |||
| SCRT2_HUMAN | 2.86 | -5.08 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.59 | 0.83 | 1.10 | n/a | No Hit | |||
| ZBT21_HUMAN | 1.95 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Whole_Blood