rs2123852 chr19:50334189 C>T
- Sequence
ccgtgctctctccgcccccaaccc[C/T]ggggacaagaaatgtttctgtggc
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP C4-2B (prostate carcinoma) HepG2 (hepatoblastoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- ZFX_HUMAN ATF2_HUMAN MTA3_HUMAN REQU_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 0.06 | 2.10 | 1.25 | n/a | No Hit | |||
| ATF2_HUMAN | 1.92 | -0.08 | 1.50 | n/a | No Hit | |||
| MTA3_HUMAN | n/a | 1.72 | 2.00 | n/a | n/a | |||
| REQU_HUMAN | -0.96 | 2.00 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood