rs2124069 chr5:43008608 A>G
- Sequence
gacctcgagtgatccacccgcctc[A/G]gcctccctaagtgctaggattaca
- ASB in cell types
- neural cell upper lobe of left lung Th1-cells
- ASB for transcription factors
- KMT2A_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KMT2A_HUMAN | -0.36 | 1.74 | 1.00 | 0.04 | Weak Concordant | |||
| TBX21_HUMAN | 1.37 | -0.68 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Spleen, Testis, Whole_Blood