rs2127357 chr10:71985841 C>T
- Sequence
aatgttgacttcatacagaatccc[C/T]tgtggtgcccttttataactacac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) macrophages form periferal blood adrenal gland MOLM14 (Adult acute myeloid leukemia)
- ASB for transcription factors
- CTCF_HUMAN IKZF1_HUMAN ARNT_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.62 | 1.63 | 1.01 | n/a | No Hit | |||
| IKZF1_HUMAN | 2.33 | -2.51 | 1.25 | n/a | n/a | |||
| ARNT_HUMAN | 3.34 | -0.21 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.14 | -0.71 | 1.00 | n/a | n/a | |||
| CDK8_HUMAN | 2.43 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP alzheimers disease (apoe4 positive), body mass index (bmi), hdl cholesterol, infant head circumference, mitral annular calcium, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Heart_Left_Ventricle, Minor_Salivary_Gland, Muscle_Skeletal, Pancreas, Testis, Thyroid