rs2127547 chr12:67595538 C>T
- Sequence
aaggctttatgttggcaaaacaaa[C/T]atctctgagatgcagtagagcgat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF7 WS8 cells MCF7 TamR (invasive ductal breast carcinoma Tamoxifen resistant) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN TLE3_HUMAN GRHL2_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.67 | 0.03 | 1.83 | -0.98 | Weak Concordant | |||
| TLE3_HUMAN | 1.92 | -1.70 | 1.50 | n/a | n/a | |||
| GRHL2_HUMAN | 0.91 | -0.06 | 1.92 | n/a | No Hit | |||
| ESR1_HUMAN | 0.77 | 0.17 | 1.89 | n/a | No Hit | |||
| BRD4_HUMAN | 1.35 | 0.64 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 8
Motif analysis
