rs2128045 chr2:182242686 G>A

Sequence
taatcagttgaaaaccttaagaaa[G/A]aagattaaggtcccccaaagagaa
ASB in cell types
D283 Med (medulloblastoma)
ASB for transcription factors
OTX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OTX2_HUMAN 2.61 n/a 6.9·10-61.00 1.25 -0.23 Weak Concordant
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Motif analysis

OTX2_HUMAN Weak Concordant
OTX2_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration,  bipolar disorder,  cystatin c in serum,  hdl cholesterol,  homa-b,  microalbuminuria,  total cholesterol change with statins,  urinary albumin-to-creatinine ratio
GTEx eQTL Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Nerve_Tibial

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