rs2133815 chr13:26628947 G>C

Sequence
taagtgtactgtgttgtggagtat[G/C]accatcctttcagagtgtctggca
ASB in cell types
neural progenitors NB69 (neuroblastoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.62 1.35 1.003.7·10-4 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP triglycerides,  triglycerides change with statins,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Spinal_cord_cervical_c-1,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Thyroid

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