rs2134536 chr6:54992882 G>A

Sequence
ctccctgctgaccaaggaacttaa[G/A]gcaaggggcactccacagagaagc
ASB in cell types
foreskin keratinocyte ID00014 (lymphoblastoid cell, DiGeorge syndrome) MS-1 (Small cell lung carcinoma)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.68 0.55 2.4·10-71.00 1.37 1.32 Weak Discordant
Items per page:
1 – 1 of 1

Motif analysis

CTCF_HUMAN Weak Discordant
CTCF_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  body mass index (bmi),  fasting insulin,  hdl cholesterol,  height,  homa-ir,  ldl cholesterol,  total cholesterol
GTEx eQTL Esophagus_Mucosa,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

Download