rs213499 chr1:54400612 A>C
- Sequence
tctctttttcagccctgaagaggg[A/C]acaagaactgctcaatttcctcag
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) GM12890 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -3.48 | 3.12 | 1.80 | 2.51 | Concordant | |||
| SPI1_HUMAN | 2.36 | -0.99 | 1.50 | -2.40 | Concordant |
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Motif analysis
