rs2135753 chr1:25011541 C>G
- Sequence
tccctggttctccctttgagaaaa[C/G]ctcaggaagtgagccgaaccccta
- ASB in cell types
- monocyte-derived dendritic cells
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.54 | n/a | 2.00 | 1.25 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), hdl cholesterol, systolic blood pressure (sbp), total cholesterol, triglycerides