rs2140553 chr10:93437096 A>G
- Sequence
tcatgctcctttgtctttcagccc[A/G]cgaatgtcatagagtttggagtcg
- ASB in cell types
- monocytes from periferal blood CD14+ monocytes
- ASB for transcription factors
- SRBP2_HUMAN STAT1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRBP2_HUMAN | 2.34 | n/a | 3.00 | -5.51 | Concordant | |||
| STAT1_HUMAN | 2.41 | n/a | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.41 | -0.43 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Testis, Thyroid, Whole_Blood