rs2141512 chr7:148262838 T>C
- Sequence
acaaaattgcagaatggtctcgtg[T/C]cacatggtcaggtcctggagagcc
- ASB in cell types
- glioblastoma cells HCASMC (Human coronary artery smooth muscle cells) K562 (myelogenous leukemia) WA01 (H1, human embryonic stem cells)
- ASB for transcription factors
- USF1_HUMAN BHE40_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| USF1_HUMAN | 2.65 | -0.54 | 1.67 | -3.69 | Concordant | |||
| BHE40_HUMAN | -4.27 | 2.80 | 1.33 | 1.19 | Weak Concordant | |||
| TCF21_HUMAN | n/a | 3.06 | 2.00 | 3.45 | Concordant |
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Motif analysis
