rs2142833 chr22:38996291 A>G

Sequence
atgccatttctgctccctcctgaa[A/G]gaggaagtgtccaggatgagaact
ASB in cell types
monocyte-derived dendritic cells TALL1 (T-Acute Lymphoblastic Leukemia)
ASB for transcription factors
SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 2.47 -0.08 3.3·10-61.00 1.75 -0.30 Weak Concordant
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Motif analysis

SPI1_HUMAN Weak Concordant
SPI1_HUMAN pic

Genetic associations

GRASP late onset alzheimers disease,  neuroblastoma (brain cancer),  partial epilepsy,  spine bone mineral density (bmd),  tetrology of fallot,  triglycerides,  triglycerides change with statins
GTEx eQTL Cells_Cultured_fibroblasts,  Whole_Blood

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