rs2142939 chr6:142823229 T>C
- Sequence
acttccaggaaagaggggtccttg[T/C]catgggtcccacactttagaaagc
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) MCF7 (Invasive ductal breast carcinoma) GM19238 (female B-cells lymphoblastoid cell lines) GM02610 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.59 | 0.43 | 1.31 | n/a | No Hit | |||
| STAG1_HUMAN | 1.92 | 0.82 | 1.00 | n/a | n/a |
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