rs2144184 chr20:10911150 T>C
- Sequence
ttgcatgccctggtggtaatgaaa[T/C]acactgtttatctgaaaacaacct
- ASB in cell types
- pancreas
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.21 | 1.78 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP arthritis including non-rheumatoid, college completion, coronary artery disease (cad), hip bone mineral density (bmd), longstanding arthritis, major depressive disorder (broad definition) (females), major depressive disorder (broad definition) (males), neuroblastoma (brain cancer), neuroticism, obesity with early age of onset (age >2), partial epilepsy, rheumatoid arthritis, systolic blood pressure (sbp)