rs2144904 chr20:44287270 G>A

Sequence
tccctacatttcatgggccccagg[G/A]cactgaactgggtaagagattact
ASB in cell types
HepG2 (hepatoblastoma) breast tumor
ASB for transcription factors
FOXA2_HUMAN TEAD3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN 1.96 -3.19 2.9·10-31.00 1.50 n/a No Hit
TEAD3_HUMAN 2.56 -2.23 5.5·10-31.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Nerve_Tibial,  Spleen,  Testis,  Thyroid,  Whole_Blood

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