rs2145623 chr14:35370030 G>C

Sequence
gccagtcagctttcggagaaacag[G/C]aaacggtctcagactggtccacgc
ASB in cell types
22RV1 (prostate carcinoma) BEAS-2B (bronchial epithelium)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 2.24 -0.39 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI chronic inflammatory diseases (ankylosing spondylitis, crohns disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)
GRASP hdl cholesterol,  height,  mitral annular calcium,  parkinsons disease,  psoriasis,  systolic blood pressure (sbp),  waist hip ratio
GTEx eQTL Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Nerve_Tibial

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