rs2147037 chr1:16613670 C>G
- Sequence
gcggcctcttctgcacaacgggtt[C/G]gagcaggttaggggccgcgcaggc
- ASB in cell types
- HepG2 (hepatoblastoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) GM02630 (Fanconi anemi) SW480 (colon adenocarcinoma)
- ASB for transcription factors
- CDN1B_HUMAN NR2C2_HUMAN NC2A_HUMAN ZN524_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CDN1B_HUMAN | 2.22 | -0.83 | 2.50 | n/a | n/a | |||
| NR2C2_HUMAN | 3.27 | -3.41 | 1.00 | n/a | No Hit | |||
| NC2A_HUMAN | 2.52 | -2.25 | 1.00 | n/a | n/a | |||
| ZN524_HUMAN | 2.39 | n/a | 2.00 | -4.10 | Concordant | |||
| JUN_HUMAN | 1.58 | 0.14 | 2.21 | n/a | No Hit |
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Motif analysis
