rs2147307 chr9:136109833 C>T
- Sequence
gtgtgacacagctgccggcatgcc[C/T]gggcacgctgcccagctgggctgg
- ASB in cell types
- MCF10A (breast epithelial cells) HCASMC (Human coronary artery smooth muscle cells) 22RV1 (prostate carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- P53_HUMAN TCF21_HUMAN E2F8_HUMAN ESR2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P53_HUMAN | 3.06 | -1.52 | 1.00 | -0.49 | Weak Concordant | |||
| TCF21_HUMAN | 2.11 | n/a | 3.00 | n/a | No Hit | |||
| E2F8_HUMAN | 2.13 | -0.77 | 1.00 | n/a | No Hit | |||
| ESR2_HUMAN | 2.13 | n/a | 3.00 | -0.32 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Pancreas, Spleen, Thyroid