rs2148596 chr10:17990053 G>A
- Sequence
agaagtgagaaaaatgttactcat[G/A]tgattgccttttttagtcagctaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) germinal center B-cells
- ASB for transcription factors
- SRF_HUMAN IKZF2_HUMAN TADBP_HUMAN SKIL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | n/a | 1.06 | 1.50 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.98 | 1.09 | 1.00 | n/a | n/a | |||
| TADBP_HUMAN | -2.92 | 2.98 | 1.00 | n/a | n/a | |||
| SKIL_HUMAN | -1.66 | 1.97 | 1.00 | n/a | n/a | |||
| BCL6_HUMAN | 2.18 | -0.27 | 2.00 | n/a | No Hit |
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