rs2150392 chr21:28540130 C>A
- Sequence
ccaaatagactacaaatcggttaa[C/A]acagagaactaaaattgtggagct
- ASB in cell types
- LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | -0.49 | 2.04 | 4.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, cystatin c in serum, homa-b, obesity with early age of onset (age >2), resistance to kuru in aged women despite likely exposure, rheumatoid arthritis, rheumatoid arthritis, combined control dataset, gender differentiated, sporadic creutzfeldt-jakob disease
GTEx eQTL Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Muscularis, Nerve_Tibial, Pituitary, Testis, Thyroid