rs2150986 chr9:85825029 G>A
- Sequence
ttacaggcgtgagccaccatgcct[G/A]tcctattcttggatgtcttcttcc
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.42 | 0.43 | 1.47 | n/a | No Hit | |||
| STAG1_HUMAN | 2.65 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Muscle_Skeletal, Testis, Thyroid