rs2151462 chr20:24931187 T>C
- Sequence
aggaaatattatatcatgggaccc[T/C]tcccatattgcagggacttccagg
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines) MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN ELF1_HUMAN ESR1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.99 | 0.91 | 1.38 | n/a | No Hit | |||
| ELF1_HUMAN | 3.22 | -2.88 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.00 | -0.80 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood