rs2151463 chr20:24931183 A>C

Sequence
ccttaggaaatattatatcatggg[A/C]cccttcccatattgcagggacttc
ASB in cell types
GM02255 (Lymphoblastoid Cell Lines) MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte spleen
ASB for transcription factors
CTCF_HUMAN ELF1_HUMAN ESR1_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.00 0.74 1.3·10-341.00 1.43 n/a No Hit
ELF1_HUMAN 3.12 -2.79 1.9·10-61.00 1.00 n/a No Hit
ESR1_HUMAN 2.23 -0.87 8.6·10-41.00 1.50 n/a No Hit
RAD21_HUMAN 2.11 -3.55 0.041.00 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Liver,  Lung,  Muscle_Skeletal,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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