rs2152013 chr6:138106042 G>C
- Sequence
accaagttgctgatatagtccccc[G/C]gaaacacaaataaacaggattggg
- ASB in cell types
- 22RV1 (prostate carcinoma)
- ASB for transcription factors
- MNT_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 2.76 | -2.64 | 1.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.23 | -1.15 | 2.00 | -3.03 | Concordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, prop taste detection threshold
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Liver, Muscle_Skeletal, Nerve_Tibial, Pancreas, Thyroid