rs2152180 chr9:135967809 C>T
- Sequence
tgtgtgtgtgtgtgtgtgtgtgtg[C/T]gcgcgcgcgcgcgcctgtgtgtgg
- ASB in cell types
- WA09 (embryonic stem cells) GM02610 (Lymphoblastoid Cell Lines) GM19099 (female B-cells Lymphoblastoid Cell Lines) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.59 | 0.97 | 1.32 | n/a | No Hit | |||
| RAD21_HUMAN | n/a | 2.93 | 2.25 | n/a | n/a |
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