rs2153114 chr14:70585410 C>A
- Sequence
caccacctgctgacagttcagcag[C/A]tctcaaagattaagagtaaaaaac
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18951 (B-cells Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) VCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.23 | 1.71 | 1.37 | n/a | No Hit | |||
| STAG1_HUMAN | -0.57 | 1.22 | 1.30 | n/a | n/a | |||
| RAD21_HUMAN | -0.23 | 1.48 | 1.14 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid