rs2153421 chr5:23774252 T>C

Sequence
tccctctaacctctgcttgtcctt[T/C]cagtcagccctgtggcactgctgc
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
FOS_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOS_HUMAN n/a 2.20 1.000.03 3.00 -4.58 Discordant
Items per page:
1 – 1 of 1

Motif analysis

FOS_HUMAN Discordant
FOS_HUMAN pic

Genetic associations

GRASP college completion,  hdl cholesterol,  ldl cholesterol change with statins,  obesity with early age of onset (age >2),  total cholesterol change with statins,  waist hip ratio,  years of education
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

Download