rs2159176 chr14:73774985 T>G
- Sequence
cccagcatcctgcaggggggaagt[T/G]caattgcagaaatgccatggtggc
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.32 | 1.48 | 1.12 | 4.69 | Concordant |
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Motif analysis
Genetic associations
GRASP bipolar disorder, hdl cholesterol, ldl cholesterol, ldl cholesterol change with statins, total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Pancreas, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood