rs2160224 chr7:12067619 A>T

Sequence
gccaataccaagaggggcctagac[A/T]cccaaaagggaagcggccagagtg
ASB in cell types
A549 (lung carcinoma) Kelly (neuroblastoma) foreskin keratinocyte
ASB for transcription factors
CTCF_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.62 0.83 1.001.2·10-5 1.36 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Colon_Transverse,  Esophagus_Mucosa

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