rs2161456 chr19:55605549 C>T
- Sequence
ccgccaccgcctcctctttccgat[C/T]ctccacgccggcgcctcgggaacg
- ASB in cell types
- 22RV1 (prostate carcinoma) CD14+ monocytes HUVEC-C (HUVEC, umbilical vein endothelial cells) K562 (myelogenous leukemia)
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN GABPA_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.92 | n/a | 2.67 | n/a | No Hit | |||
| STAT1_HUMAN | 2.17 | 0.02 | 2.50 | 0.75 | Weak Discordant | |||
| GABPA_HUMAN | 1.40 | 1.11 | 1.78 | n/a | No Hit |
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Motif analysis
