rs2162593 chr20:59043739 T>C
- Sequence
tagtcaaggctcaatgactactta[T/C]tgaaaaatgaaaaaaatcaatagc
- ASB in cell types
- HCC1954 (ductal breast carcinoma)
- ASB for transcription factors
- SMAD3_HUMAN ZN335_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD3_HUMAN | n/a | 3.12 | 2.00 | n/a | No Hit | |||
| ZN335_HUMAN | 2.63 | -4.96 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, college completion, cystatin c in serum, mitral annular calcium, refractive error
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood