rs2164040 chr7:43547892 T>G
- Sequence
gcacttaaacacagtggaaaatat[T/G]cagtaaacaagaaagatcactttt
- ASB in cell types
- LNCaP (prostate carcinoma) LNCaP95 LNCaP C4-2 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN A2NVP9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.78 | -0.22 | 1.54 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.97 | -0.01 | 1.47 | -3.53 | Concordant | |||
| A2NVP9_HUMAN | 2.98 | -4.29 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood