rs2165450 chr6:158648847 G>A

Sequence
tgttgtaaaggaaaagaaactctg[G/A]ctgacacatatctaaagtgagagt
ASB for transcription factors
IRF4_HUMAN IKZF1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IRF4_HUMAN 1.15 -0.91 0.031.00 1.00 1.38 Weak Discordant
IKZF1_HUMAN 2.46 -1.50 0.041.00 2.00 n/a n/a
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Motif analysis

IRF4_HUMAN Weak Discordant
IRF4_HUMAN pic

Genetic associations

GRASP age-related macular degeneration,  ldl cholesterol change with statins,  total cholesterol change with statins,  triglycerides
GTEx eQTL Artery_Aorta,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Thyroid,  Whole_Blood

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