rs2165497 chr8:95085601 A>G

Sequence
actcgggaggcttgagactgtagc[A/G]tgctgtgctcgtgcctgtgaatag
ASB in cell types
T47D (invasive ductal carcinoma)
ASB for transcription factors
PRGR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PRGR_HUMAN 0.18 1.42 1.006.6·10-3 1.12 -2.91 Discordant
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Motif analysis

PRGR_HUMAN Discordant
PRGR_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  fasting blood glucose,  triglycerides,  waist hip ratio
GTEx eQTL Brain_Cerebellum,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Small_Intestine_Terminal_Ileum,  Spleen,  Testis,  Whole_Blood

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