rs2168241 chr14:69398564 C>G
- Sequence
gatcaccggtatagacagtgacat[C/G]agacatctttcattagccctactc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) primary B-CLL cells HepG2 (hepatoblastoma) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- FOXK2_HUMAN E4F1_HUMAN TCF21_HUMAN IRF5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 3.86 | -3.53 | 1.00 | n/a | No Hit | |||
| E4F1_HUMAN | 3.87 | -3.85 | 1.00 | n/a | No Hit | |||
| TCF21_HUMAN | 1.75 | -1.42 | 3.00 | n/a | No Hit | |||
| IRF5_HUMAN | 1.95 | -1.91 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Pituitary, Spleen, Stomach, Testis, Whole_Blood