rs2168333 chr1:219442866 T>G

Sequence
ttgtgattaatggtgatttttatc[T/G]tccgacttcaaagattgactcatg
ASB in cell types
SK-N-SH (neuroblastoma) GM23248
ASB for transcription factors
GATA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA3_HUMAN 1.59 -1.10 0.041.00 1.00 -1.84 Weak Concordant
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Motif analysis

GATA3_HUMAN Weak Concordant
GATA3_HUMAN pic

Genetic associations

GRASP adiponectin levels,  cystatin c in serum,  fasting insulin,  hdl cholesterol,  height in controls,  homa-b,  homa-ir,  irritible bowel syndrome,  waist hip ratio
GTEx eQTL Adrenal_Gland,  Skin_Not_Sun_Exposed_Suprapubic

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