rs2169480 chr15:34343168 A>G
- Sequence
cgtgttcgtcaatttccttcctgc[A/G]taaccggaagtctctctctcctgg
- ASB in cell types
- K562 (myelogenous leukemia) Jurkat (T-cells) VCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ERG_HUMAN RAD21_HUMAN STAT1_HUMAN INT13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ERG_HUMAN | -0.00 | 1.95 | 2.00 | -0.06 | Weak Discordant | |||
| RAD21_HUMAN | 1.63 | 0.32 | 1.33 | n/a | n/a | |||
| STAT1_HUMAN | 1.24 | 0.57 | 2.00 | -2.15 | Concordant | |||
| INT13_HUMAN | -0.40 | 1.33 | 1.67 | n/a | n/a | |||
| FOXA1_HUMAN | 0.37 | 2.84 | 1.61 | n/a | No Hit |
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Motif analysis
