rs2170016 chr5:180861466 T>C
- Sequence
gccaggaggccgtgggcggggctt[T/C]ctgtttccgtgcccattagcttct
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) VCaP (prostate carcinoma) breast tumor 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ELF1_HUMAN GABPA_HUMAN LMBL2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.52 | 0.59 | 1.80 | n/a | No Hit | |||
| ELF1_HUMAN | 0.83 | 1.28 | 1.25 | 5.72 | Concordant | |||
| GABPA_HUMAN | 2.58 | -0.36 | 1.83 | 2.74 | Discordant | |||
| LMBL2_HUMAN | -1.59 | 1.85 | 1.00 | n/a | n/a | |||
| BRD2_HUMAN | -0.12 | 1.31 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Thyroid, Whole_Blood